A command-line tool for detecting and extracting single homeologous polymorphisms (SHPs) from the subgenomes of allopolyploid species. This tool integrates three main algorithms, WGA, VCF2ALIGNMENT ...
WitChi is an analysis and pruning tool designed to evaluate and reduce compositional bias in multiple sequence alignments (MSAs). It utilizes statistical methods, permutation tests, and parallel ...
ABSTRACT: The absence of the atp8 gene in the mitochondrial genomes of Platyhelminthes and certain other mollusks has garnered significant attention in recent years. Growing evidence suggests that ...
ABSTRACT: Genomic surveillance has proven to be a critical source of information for understanding and responding to the COVID-19 pandemic. In Africa, genomic surveillance was very limited, and few ...
Aligning large language models (LLMs) with human values remains difficult due to unclear goals, weak training signals, and the complexity of human intent. Direct Alignment Algorithms (DAAs) offer a ...
A nearly gapless genome sequence of the echidna, an egg-laying mammal with multiple sex chromosomes, helps researchers to track genomic reorganization events that gave rise to a highly unusual sex ...
We present MMPred, a software tool that integrates epitope prediction and sequence alignment algorithms to streamline the computational analysis of molecular mimicry events in autoimmune diseases.
The field of robotic manipulation has witnessed a remarkable transformation with the emergence of vision-language-action (VLA) models. These advanced computational frameworks have demonstrated ...
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